Retrieve sample-specific thresholds from previous analyses — GetSapThreshold • STID

This function retrieves stored threshold information from previous SpotDetect analyses (both gene and gene set based)

Usage

GetSapThreshold(STID_obj, meta_key, ...)

# S3 method for class 'STID'
GetSapThreshold(STID_obj = NULL, meta_key = NULL, ...)

Arguments

STID_obj: An STID object
meta_key: Character vector of metadata keys to retrieve thresholds for
...: Additional arguments passed to methods

Value

A list containing threshold information for each requested metadata key, with components 'stat' and 'threshold'

Examples

if (FALSE) { # \dontrun{
# Retrieve thresholds from previous analyses
thresholds <- GetSapThreshold(
  STID_obj = STID_object,
  meta_key = c("M1_SpotDetect_Gene_20240101", "M1_SpotDetect_Geneset_20240101")
)
} # }