Get MultiSampNiche cells — GetMSNicheCells • STID

Retrieves cell-level data from MultiSampNiche objects for specified multi-sample analyses.

Usage

GetMSNicheCells(STID_obj, loop_id, niche_key, ...)

# S3 method for class 'STID'
GetMSNicheCells(
  STID_obj = NULL,
  loop_id = "LoopAllMulti",
  niche_key = NULL,
  ...
)

Arguments

STID_obj: An STID object
loop_id: Character vector, multi-sample analysis identifiers
niche_key: Character, niche key to retrieve
...: Additional arguments passed to methods

Value

List of cell data frames, one per multi-sample analysis

Examples

if (FALSE) { # \dontrun{
multi_cells <- GetMSNicheCells(ist_obj,
                               loop_id = c("comparison1", "comparison2"),
                               niche_key = "niche_virulence")
} # }